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BenSiv/README.md

Hi, I'm Ben Sivan πŸ‘‹

Data Scientist | Bioinformatician | AgTech & FoodTech Specialist

I bridge the gap between biology and computation. My work focuses on building infrastructure for scientific research, automating complex biological workflows, and creating high-performance tools for 3D modeling and knowledge management.


πŸš€ What I'm Building

  • Luametry: A professional, programmatic CAD tool for Lua, supporting STEP, 3MF, and OBJ exports with high-fidelity terminal previews.
  • Brain-ex: A terminal-first "second brain" for rapid note capture and task management, featuring optional Obsidian integration.
  • Luam: A modernized, minimal Lua dialect designed for cleaner syntax and less boilerplate.
  • Celleste-Expert: A RAG-based AI agent for scientific literature mining and protocol extraction from unstructured text.

πŸ› οΈ Tech Stack & Expertise

Area Tools & Tech
Data Science Python (Scikit-learn, PyTorch), R, Julia, SQL, NLP, RAG, LLMs
Bioinformatics Sequence Processing, Genome Assembly, Variant Modeling, Expression Analysis
Engineering/DevOps Docker, Podman, AWS, GCP, Terraform, Ansible, Git, Lua
CAD & Fabrication Luametry, OpenSCAD, 3D Modeling, FDM 3D Printing

πŸŽ“ Background

  • M.Sc. in Biotechnology from Tel-Hai College (Focus on CRISPR/Cas9 gene editing in trees)
  • Data Science Program Graduate at Israel Tech Challenge
  • Currently a Data Scientist at Celleste-Bio, architecting scientific knowledge infrastructure.

πŸ“« Connect with me


"Automating the redundant so we can focus on the breakthrough."

Pinned Loading

  1. luam luam Public

    Minimal and Modernized Lua dialect.

    C

  2. luametry luametry Public

    Lua-based parametric CAD tool.

    Lua 1

  3. brain-ex brain-ex Public

    A terminal-first second brain for rapid note capture, task tracking, and Obsidian integration.

    Lua 1

  4. celleste-bio/cvs-flask-holder celleste-bio/cvs-flask-holder Public

    Parametric OpenSCAD implementations of the CVS (Cell Volume after Sedimentation) Apparatus.

    OpenSCAD

  5. icba-project icba-project Public

    Predicting milk attributes as a factor of cattle feed

    Jupyter Notebook

  6. odor-detection odor-detection Public

    Forked from EllaJewison/Final_project

    Odor detection and classification project

    Jupyter Notebook 1