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@theLongLab

The Long Lab

Software from Dr. Quan Long's research group at the University of Calgary

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  1. CATE CATE Public

    A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://do…

    Cuda 15

  2. PoolHapX PoolHapX Public

    PoolHapX

    Java 6 1

  3. kTWAS kTWAS Public

    Java 6 1

  4. TF-TWAS TF-TWAS Public

    R 6 1

  5. transTF-TWAS transTF-TWAS Public

    Python 5 1

  6. Jawamix5 Jawamix5 Public

    Java 4 1

Repositories

Showing 10 of 29 repositories
  • theLongLab/Transfer-Learning’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 7, 2026
  • CATE Public

    A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8

    theLongLab/CATE’s past year of commit activity
    Cuda 15 MIT 0 0 0 Updated Nov 23, 2025
  • moka Public Forked from davidenoma/moka

    MOKA Snakemake pipeline for GWAS incorporating user provided multi-omics data sources such as gene expression, neural network weights, transcription factor binding, and evolutionary conservation scores.

    theLongLab/moka’s past year of commit activity
    R 0 MIT 3 0 0 Updated Oct 8, 2025
  • Kernel_smoothed_permutation Public

    Kernel-smoothed permutation is a method that constructs the null distribution of a test statistic through a novel kurtosis-driven Box-Cox transformation, followed by a kernel- based density estimation (KDE).

    theLongLab/Kernel_smoothed_permutation’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 16, 2025
  • Apollo Public

    A comprehensive simulator for exploring the dynamics of viral transmission complete with within host evolution.

    theLongLab/Apollo’s past year of commit activity
    Cuda 0 MIT 0 0 0 Updated Jun 17, 2025
  • AE-TWAS Public
    theLongLab/AE-TWAS’s past year of commit activity
    Python 3 1 1 0 Updated Mar 25, 2025
  • transTF-TWAS Public
    theLongLab/transTF-TWAS’s past year of commit activity
    Python 5 GPL-3.0 1 0 0 Updated Oct 17, 2024
  • Jawamix5 Public
    theLongLab/Jawamix5’s past year of commit activity
    Java 4 1 0 1 Updated Sep 17, 2024
  • TF-TWAS Public
    theLongLab/TF-TWAS’s past year of commit activity
    R 6 GPL-3.0 1 1 0 Updated Oct 13, 2023
  • IMAS Public
    theLongLab/IMAS’s past year of commit activity
    R 0 0 0 0 Updated Sep 15, 2023

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